CDS

Accession Number TCMCG007C01773
gbkey CDS
Protein Id XP_018511250.1
Location complement(join(12026079..12026895,12026981..12027139,12027231..12027389,12027505..12027635,12027724..12027829,12027922..12028021,12028123..12028248,12028422..12028625,12028732..12028819,12028923..12028971,12029059..12029154,12029338..12029421,12029554..12029647,12029737..12029861,12030012..12030087,12030166..12030321,12030413..12030419,12030514..12030551,12030639..12030718,12030799..12030870,12030992..12031083,12031207..12031281,12031454..12031590,12031659..12031744,12031804..12031895,12031970..12032305))
Gene LOC103845154
GeneID 103845154
Organism Brassica rapa

Protein

Length 1194aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_018655734.2
Definition DNA ligase 4 isoform X2 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA ligase
KEGG_TC -
KEGG_Module -
KEGG_Reaction R00381        [VIEW IN KEGG]
KEGG_rclass RC00005        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10777        [VIEW IN KEGG]
EC 6.5.1.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03450        [VIEW IN KEGG]
map03450        [VIEW IN KEGG]
GOs GO:0000726        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003909        [VIEW IN EMBL-EBI]
GO:0003910        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005576        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006266        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006297        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006303        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010165        [VIEW IN EMBL-EBI]
GO:0010212        [VIEW IN EMBL-EBI]
GO:0016874        [VIEW IN EMBL-EBI]
GO:0016886        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032807        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048046        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051103        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGACGGAGGAGATCAAACTCAGCGTACTAGTGTCTCTCTTCAACTGGATTCAGAAGAGCAAAACCTCATCCCAGAAACGCTCCAAGTTCCGCAAGTTCCTCGACACCTACTGCAAACCCTCCGATTACTTCTCCGCCGTCCGTCTCATCATCCCGTCGCTCGACCGAGAGCGAGGCAGCTACGGCCTCAAGGAGTCTGTGCTCGCCACGTGTCTCATCGACGCCCTCGGAATCTCTCGCGATGCTCCCGACGCTGTTCGCCTTCTCAATTGGCGTAAAGGAGGAACGGCTAAGGCTGGAGCCAACGCCGGAAACTTCTCCTTGATTGCTGCTGAGGTGCTGCAACGTAGGCAAGGGATGGCGTCTGGTGGGTTGAGTGTTAAGGAGTTGAATGATTTGCTTGATCGTTTGGCTTCGAGTGAGAACAGAGGGGGGAAGACTTCTGTTCTTTCTACGCTGATTCAGAAGACGAATGCACAGGAGATGAAGTGGGTCATTAGGATCATTCTTAAAGACTTGAAGCTGGGGATGAGCGAGAGGTGTATATTTCAGGAGTTCCATCCAGATGCTGAGGACTTGTTTAATGTCACTTGTGACTTGAAACTAGTCTGTGAAAAGCTCAGGGATCGCCACCAACGTCACAAGCGCCAGGATATAGAAGTTGGAAAAGCCGTACGACCCCAGTTAGCTATGCGTATCAGTGACGTAAATGCTGCTTGGAAGAAGCTCCATGGGAAAGATGTAGTTGCTGAGTGCAAATTTGATGGGGATCGCATACAGATACACAAAAATGGGACTGAAATACATTACTTCTCTAGGAACTTCCTTGATCATTCTGAATATGCACATGCCATGTCTGATCTTATCGTACAAAATATAATTGCTGACAAGTGTATCCTTGATGGTGAAATGTTGGTCTGGGATACATCACTTAATCGGTTTGCTGAGTTTGGTTCTAATCAGGAAATAGCCAAAGCAGCAAGGGAGGGTCTCGACAGCCATAGACAGTTATGTTATGTTGCCTTTGATGTGCTTTATGTTGGCGATACTAGCGTCATCCACCAGAGTTTAAAAGAACGGCATGAACTCCTGAGGAAAGTGGTTAAGCCTTTAAAAGGCCGGCTTGAAGTTCTAGTGCCCGAAGGTGGTCTCAATGTTCATCGCCCTTCTGGAGAACCAAGTTGGTCTATTGTGGTTCATTCCGCAGCTGATGTTGAGCGGTTTTTCAAAGAAACAGTTGAAAATAGAGATGAAGGAGTTGTGCTTAAAGACCTGGGATCGAAATGGGAACCTGGAGATCGTAGTGGCAAGTGGTTGAAGTTGAAGCCTGAATATGTCCGCGCTGGTTCTGATCTAGATGTTCTTATAATAGGAGGATACTATGGCTCTGGCCGTCACGGAGGAGAGGTAGCACAGTTTCTCGTTGGGTTGGCTGACCGGGCAGAGGCAAATGTATATCCCAGGCGATTTATGTCGTTTTGTAGAGTTGGCACAGGACTTTCCGATGAAGAGCTTAACACTGTTGTAAGCAAACTGAAGCCTTATTTCAGAAAAAATGAACACCCAAAGAAGGCTCCACCAAGCTTTTACCAGGTCACAAATCACTCAAAAGAGAGACCTGATGTTTGGATTGAAAGCCCGGAAAAATCAATAATACTCTCCATCACTAGTGACATCAGGACAATAAGGTCTGAGGTTTTTGTGGCACCTTACAGCCTCAGGTTTCCTCGGATTGATAAAGTAAGATACGACAAACCCTGGCATGAATGTCTCGATGTGCAAGCTTTTGTGGAATTGGTTAACTCAAGTAACGGCACCACACAGAAACAGAAGGAATCCGAAAGCACGCAGGACAATCCGAAAGTCATTAAATCGTCCAAGAGAGGAGGAGAGAAAAAGAATGTGCCTCATGTCCCATCTCAGTTTATTCAAACTGATGTATCGGATATCAAGGGCAAGACCTCAATCTTCTCCAATATGATATTTTATTTTGTAAACCTGCCTCGGTCCCATTCTCTTGATACATTCCACAAAATGGTGGTTGAGAATGGAGGGAAGTTCTCAATGAACTTAAACAATTCTGTGACTCATTGCATTGCAGCGGAAAGCAGTGGAATAAAGTATCAGGCAGCAAAACGTCAAAGAGATGTCATCCACTTTTCTTGGGTCTTAGATTGTTGTTCACGGAATAATCTGCTTCCTTTGCAGCCAAAGTACTTCCTCCATCTCACTGATGCTTCAAGGACTAAATTACAGGATGAAATTGACGAGTTTTCCGATTCTTATTTCTTTGATTTAGACCTTGAAGGTCTCAAACAGGTCTTGAGCAATGCCAAGCAATCGGAAGACTCAAAATCCATTGAATACTACAAGAAAAAGCTATGTCCGGAGAAAAGATGGTCCTGCTTCATCGGTTGCTGCATTTACTTTCACCTCTATAGTGAAACATTCAATGAAGAGGAAGCCCTGTTGGGAATCATGGCTAAGAGATTAGCGCTTGAAGTCTTAATGGGTGGTGGTAAAGTCAGCAATAATCTTGCTCATGCGTCGCACCTTGTAGTCCTTTCTATAGCAGAAGACTCTTTGGACTTTACTTCAGTTTCAAAAAGTTTCAGCGAAAAGGAGAAACGTCTTTTGCTGAAGAGAAGGCTACATGTTGTTAGCTCGAACTGGTTAGAAGACAGCTTGCAAAGAGAGGAAAGAGTATGCGAGGAGGTGTACACTCTGAGGCCTAAGAGTATGGAAGAGTCTGATACTGAAGAATCAGATAAAGCTGAACATGATACAACTGAAGTAGCTTCCGGTGTTAGTGCTCAAACCGAAGAGCTAGCTTCCTCGAAAATGGCAGTTGCGAGTTCAAGAGGACGGTCAAGTACTAGAGCTGGTAATAAAAGGGGAAGGTCTTCTACAAACTCAGTGAAACGAGTACAGAGACGCAGAGGCAAGCAGCCTTCTAAGATAGGTGGAAGTGAGACAGAGGAGAGTGATGCGGCTACGGAAGAAAAGGCTGCAACAAGACTCAGTGATGATATAGCAGAAGACTCTGATGATGCTCAAAGAAACTCTAGGAGAGGAAGATCTGCAAAGAGAGGGAAGTCTCGTGTGGCACAACCCCAAAGAGTACAGAGACCAAGAAGAGGCAAGAAGCCTTTGAAGATAGGAGGAGATGACTCTGAGGAAAATGATGATTTTGATGACAAGAAAAATGATTCTGCCGACGAGACAAAGCACAGAGAATCACTGGAGAGAGATAACACAGTATCAGTTGAAGAGGCCTCCTCGCAAGATTCTAGAAATGCAAAGACCGAGATGGATAGGGAAGAGAAGATACAAATCCATGAGGATCCATTACAAGCTATGTTGATGAACATGATCCCAAGCCTCACTCTGAGAAACACAAGCCGAACGGGCGAAGCTAGTACGGCTAATGTTTGTGGTGAGAGTGAGTCTTCAGAGAAAAGAAAACTTGGCGCCGAGACTGATAATGCTTGTGTGAAGAACGCAGAGGCAGATGAAGTTCCTCCTGTGAAGAAAAAGAAAGTTAGCTACCGCGATGTTGCCGGAGAACTGCTCAAAGACTGGTGA
Protein:  
MTEEIKLSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFSAVRLIIPSLDRERGSYGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMASGGLSVKELNDLLDRLASSENRGGKTSVLSTLIQKTNAQEMKWVIRIILKDLKLGMSERCIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAWKKLHGKDVVAECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSDLIVQNIIADKCILDGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKERHELLRKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHSAADVERFFKETVENRDEGVVLKDLGSKWEPGDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLADRAEANVYPRRFMSFCRVGTGLSDEELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDNPKVIKSSKRGGEKKNVPHVPSQFIQTDVSDIKGKTSIFSNMIFYFVNLPRSHSLDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFSWVLDCCSRNNLLPLQPKYFLHLTDASRTKLQDEIDEFSDSYFFDLDLEGLKQVLSNAKQSEDSKSIEYYKKKLCPEKRWSCFIGCCIYFHLYSETFNEEEALLGIMAKRLALEVLMGGGKVSNNLAHASHLVVLSIAEDSLDFTSVSKSFSEKEKRLLLKRRLHVVSSNWLEDSLQREERVCEEVYTLRPKSMEESDTEESDKAEHDTTEVASGVSAQTEELASSKMAVASSRGRSSTRAGNKRGRSSTNSVKRVQRRRGKQPSKIGGSETEESDAATEEKAATRLSDDIAEDSDDAQRNSRRGRSAKRGKSRVAQPQRVQRPRRGKKPLKIGGDDSEENDDFDDKKNDSADETKHRESLERDNTVSVEEASSQDSRNAKTEMDREEKIQIHEDPLQAMLMNMIPSLTLRNTSRTGEASTANVCGESESSEKRKLGAETDNACVKNAEADEVPPVKKKKVSYRDVAGELLKDW